Mini parallab workshop, March 19, 2009: Difference between revisions
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A number of things changed on fimm since the workshop 19/3-09 | A number of things changed on fimm since the workshop 19/3-09 | ||
# <tt>/work/atlas</tt> was broken by some cleaning script! for now use | |||
/work2/atlas instead | <tt>/work2/atlas</tt> instead | ||
# I have removed the old atlas installations, we now use the grid installations | |||
* to see what versions are available use | #* to see what versions are available use | ||
sh /work2/atlas/install_scripts/list_athena_release.sh | <pre>sh /work2/atlas/install_scripts/list_athena_release.sh | ||
(current list: 14.2.10 14.2.10.1 14.2.23 14.2.23.2 14.2.23.3 14.2.25 | (current list: 14.2.10 14.2.10.1 14.2.23 14.2.23.2 14.2.23.3 14.2.25 | ||
14.2.25.6 14.2.25.8 14.5.0 14.5.0.7 14.5.1 14.5.1.2 14.5.1.3 14.5.2 | 14.2.25.6 14.2.25.8 14.5.0 14.5.0.7 14.5.1 14.5.1.2 14.5.1.3 14.5.2 | ||
14.5.2.1 14.5.2.2 14.5.2.3 15.0.0) | 14.5.2.1 14.5.2.2 14.5.2.3 15.0.0) | ||
* to get an athena environment use | </pre> | ||
source /work2/atlas/install_scripts/setup_athena.sh version (where | #* to get an athena environment use | ||
version is one in the previous list) | <pre> | ||
* to get a work area use | source /work2/atlas/install_scripts/setup_athena.sh version | ||
</pre> | |||
(where version is one in the previous list) | |||
#* to get a work area use | |||
<pre> | |||
source /work2/atlas/install_scripts/setup_athena_workarea.sh | source /work2/atlas/install_scripts/setup_athena_workarea.sh | ||
</pre> | |||
and scp the files to fimm | # for now dq2 is broken, avoid it, if you need it use it on lxplus and scp the files to fimm | ||
# make sure everyone can see your files, please run the following commands | |||
<pre> | |||
chown -R ${USER}:atlasuib /work/${USER} /work2/${USER} | chown -R ${USER}:atlasuib /work/${USER} /work2/${USER} | ||
chmod -R g+r /work/${USER} /work2/${USER} | chmod -R g+r /work/${USER} /work2/${USER} | ||
and in case you have something in /workX/users/ do the same for these files | </pre> | ||
and in case you have something in <tt>/workX/users/</tt> do the same for these files | |||
5) With interactive jobs one can run ATLAS eventviewers on fimm, try | 5) With interactive jobs one can run ATLAS eventviewers on fimm, try | ||
it - its awesome | it - its awesome | ||
<pre> | |||
ssh -X ${USER}@fimm.bccs.uib.no | ssh -X ${USER}@fimm.bccs.uib.no | ||
qsub -I -X | qsub -I -X | ||
</pre> | |||
(the -X's are for X window forwarding, you must use these) | (the -X's are for X window forwarding, you must use these) | ||
(wait until prompt changes to interactive job, often quick, but can | (wait until prompt changes to interactive job, often quick, but can | ||
take some minutes) | take some minutes) | ||
in the job get a workarea | in the job get a workarea | ||
<pre> | |||
source /work2/atlas/install_scripts/setup_athena.sh 14.5.2.3 | source /work2/atlas/install_scripts/setup_athena.sh 14.5.2.3 | ||
source /work2/atlas/install_scripts/setup_athena_workarea.sh | source /work2/atlas/install_scripts/setup_athena_workarea.sh | ||
and in the prompt run either | </pre> | ||
atlantis | and in the prompt run either <tt>atlantis</tt> or <tt>vp1</tt> | ||
or | |||
vp1 | |||
== Program == | == Program == |
Revision as of 11:40, 24 April 2009
The meeting will take place in Bjarnes office at IFT Marc 19, 2009 at 12:30, and also on EVO (see below)
Presentation
https://wikihost.uib.no/ift/images/d/de/FimmWorkshop18.03.09v2.pdf
Update
A number of things changed on fimm since the workshop 19/3-09
- /work/atlas was broken by some cleaning script! for now use
/work2/atlas instead
- I have removed the old atlas installations, we now use the grid installations
- to see what versions are available use
sh /work2/atlas/install_scripts/list_athena_release.sh (current list: 14.2.10 14.2.10.1 14.2.23 14.2.23.2 14.2.23.3 14.2.25 14.2.25.6 14.2.25.8 14.5.0 14.5.0.7 14.5.1 14.5.1.2 14.5.1.3 14.5.2 14.5.2.1 14.5.2.2 14.5.2.3 15.0.0)
- to get an athena environment use
source /work2/atlas/install_scripts/setup_athena.sh version
(where version is one in the previous list)
- to get a work area use
source /work2/atlas/install_scripts/setup_athena_workarea.sh
- for now dq2 is broken, avoid it, if you need it use it on lxplus and scp the files to fimm
- make sure everyone can see your files, please run the following commands
chown -R ${USER}:atlasuib /work/${USER} /work2/${USER} chmod -R g+r /work/${USER} /work2/${USER}
and in case you have something in /workX/users/ do the same for these files 5) With interactive jobs one can run ATLAS eventviewers on fimm, try it - its awesome
ssh -X ${USER}@fimm.bccs.uib.no qsub -I -X
(the -X's are for X window forwarding, you must use these) (wait until prompt changes to interactive job, often quick, but can take some minutes) in the job get a workarea
source /work2/atlas/install_scripts/setup_athena.sh 14.5.2.3 source /work2/atlas/install_scripts/setup_athena_workarea.sh
and in the prompt run either atlantis or vp1
Program
- Intro to fimm - the parallab linux cluster
- What is there
- How to get an account
- The file system
- How to submit a simple job
- PBS scripts
- PBS commands
- What is in the ATLAS work directory
- Using root in a job
- Using athena in a job
- Using nordugrid & dq2
Evo connection information
People at CERN can connect from the office in building 21, it should be empty now anyway. There is a duet mic/speaker device there already.
Title: Bergen parallab workshop I Description: Workshop for Bergen ATLAS people on how to use the parallab resources Community: ATLAS Password: ATLASFimm Time: 2009-03-18 12:00-15:00 (meeting starts 12:30) Meeting URL: http://evo.caltech.edu/evoGate/koala.jnlp?meeting=eleBevvavDalatIuanIl Phone Bridge: ID: 863906 Password: 0686 Swiss: +41 22 76 71400