Difference between revisions of "Lab: OWL 1"

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=Lab 7: RDFS Plus / Basic OWL=
+
=Lab 6: OWL 1 ("RDFS Plus / Basic OWL")=
  
 
==Topics==
 
==Topics==
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WebVOWL visualisation.
 
WebVOWL visualisation.
 +
 +
RDF and RDFS might be relevant too.
  
 
==Classes/Vocabularies==
 
==Classes/Vocabularies==
Line 10: Line 12:
 
Vocabulary:
 
Vocabulary:
 
* OWL (sameAs, equivalentClass, equivalentProperty, differentFrom, disjointWith, inverseOf)
 
* OWL (sameAs, equivalentClass, equivalentProperty, differentFrom, disjointWith, inverseOf)
 
+
* OWL (SymmetricProperty, AsymmetricProperty, ReflexiveProperty, IrreflexiveProperty, TransitiveProperty, FunctionalProperty, InverseFunctionalProperty)
  
 
==Tasks==
 
==Tasks==
 
'''Task 1'''
 
'''Task 1'''
  
'''Write OWL triples that corresponds to the following text. '''.If you can, try to build on your example from labs 2 and 7, or extend the triples at the bottom of the page.
+
'''Write OWL triples that corresponds to the following text. '''.If you can, try to build on your example from labs 2 and 7, or extend the triples at the bottom of the page. OWL can be imported from rdflib.namespace.
  
Cade and Emma are two different persons. All the countries mentioned above are different. The country USA above is
+
Cade and Emma are two different persons. <!-- All the countries mentioned above are different. --> The country USA above is
 
the same as the DBpedia resource http://dbpedia.org/resource/United_States (dbr:United_States) and the GeoNames
 
the same as the DBpedia resource http://dbpedia.org/resource/United_States (dbr:United_States) and the GeoNames
 
resource http://sws.geonames.org/6252001/ (gn:6252001). The person class (the RDF type the Cade and Emma resources)
 
resource http://sws.geonames.org/6252001/ (gn:6252001). The person class (the RDF type the Cade and Emma resources)
Line 35: Line 37:
 
g.add((ex.Cade, ex.livesWith, ex.Mary))
 
g.add((ex.Cade, ex.livesWith, ex.Mary))
 
g.add((ex.Cade, ex.sibling, ex.Andrew))
 
g.add((ex.Cade, ex.sibling, ex.Andrew))
g.add((ex.Cade, ex.sibling, ex.Anna))
 
 
g.add((ex.Cade, ex.hasFather, ex.Bob))
 
g.add((ex.Cade, ex.hasFather, ex.Bob))
 
g.add((ex.Bob, ex.fatherOf, ex.Cade))
 
g.add((ex.Bob, ex.fatherOf, ex.Cade))
 
</syntaxhighlight>
 
</syntaxhighlight>
  
Look through the predicates(properties) above and add new triples for each one that describes them as any of the following: a reflexive , irreflexive, symmetric, asymmetric, transitive, or a functional property.
+
Look through the predicates(properties) above and add new triples for each one that describes them as any of the following: a reflexive , irreflexive, symmetric, asymmetric, transitive, functional, or an Inverse Functional Property.
 
e.g
 
e.g
 
<syntaxhighlight>
 
<syntaxhighlight>
Line 48: Line 49:
 
'''Task 3'''
 
'''Task 3'''
  
Print/Serialize the ontology. Then use owlrl to infer additional triples. Can you spot the many inferences?
+
Print/Serialize the ontology. Then use owlrl like seen below to infer additional triples. Can you spot the many inferences?
  
 
<syntaxhighlight>
 
<syntaxhighlight>
Line 57: Line 58:
 
</syntaxhighlight>
 
</syntaxhighlight>
  
==If you have more time...==
+
Finally write the ontology to a TURTLE file, and try to visualise it using http://visualdataweb.de/webvowl/ . WebVOWL is oriented towards visualising classes and their properties, so the individuals may not show.
Write the ontology to a TURTLE file, and try to visualise it using http://visualdataweb.de/webvowl/ . WebVOWL is oriented towards visualising classes and their properties, so the individuals may not show.
+
 
  
 
==Useful Reading==
 
==Useful Reading==
* [https://wiki.uib.no/info216/index.php/File:S06-RDFSPlus-5.pdf Lecture Notes]
+
* [https://wiki.uib.no/info216/index.php/File:S06-OWL-1.pdf Lecture Notes]
  
 
* [https://wiki.uib.no/info216/index.php/Python_Examples#RDFS_Plus_.2F_OWL_inference_with_RDFLib Example page]
 
* [https://wiki.uib.no/info216/index.php/Python_Examples#RDFS_Plus_.2F_OWL_inference_with_RDFLib Example page]
  
 
==Triples you can extend for the tasks==
 
==Triples you can extend for the tasks==
 +
'''Python'''
 
<syntaxhighlight>
 
<syntaxhighlight>
  
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# Namespaces
 
# Namespaces
 
ex = Namespace("http://example.org/")
 
ex = Namespace("http://example.org/")
dbp = Namespace("http://dbpedia.org/resource/United_States")
+
dbp = Namespace("http://dbpedia.org/resource/")
 
geo = Namespace("http://sws.geonames.org/")
 
geo = Namespace("http://sws.geonames.org/")
 
schema = Namespace("https://schema.org/")
 
schema = Namespace("https://schema.org/")
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g.add((ex.graduated, RDFS.domain, FOAF.Person))
 
g.add((ex.graduated, RDFS.domain, FOAF.Person))
 
g.add((ex.degreeFrom, RDFS.subPropertyOf, ex.graduated))
 
g.add((ex.degreeFrom, RDFS.subPropertyOf, ex.graduated))
g.add((ex.Biology, RDFS.label, Literal("Biology")))
+
g.add((ex.Biology, RDFS.label, Literal("Biology", lang="en")))
g.add((ex.Biology, RDFS.label, Literal("La Biologie")))
+
g.add((ex.Biology, RDFS.label, Literal("La Biologie", lang="fr")))
 
g.add((ex.Biology, RDFS.comment, Literal("Biology is a natural science concerned with the study of life and living organisms, including their structure, function, growth, evolution, distribution, identification and taxonomy.")))
 
g.add((ex.Biology, RDFS.comment, Literal("Biology is a natural science concerned with the study of life and living organisms, including their structure, function, growth, evolution, distribution, identification and taxonomy.")))
 +
g.add((ex.Chemistry, RDFS.label, Literal("Chemistry", lang="en")))
 +
g.add((ex.Chemistry, RDFS.label, Literal("La Chimie", lang="fr")))
 +
g.add((ex.Chemistry, RDFS.comment, Literal("Chemistry is a branch of physical science that studies the composition, structure, properties and change of matter.", lang="en")))
 +
 +
# Write OWL triples here
 +
</syntaxhighlight>
 +
'''Turtle'''
 +
<syntaxhighlight>
 +
@prefix ex: <http://example.org/> .
 +
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
 +
 +
ex:Cade ex:degreeFrom ex:University_of_California ;
 +
    ex:degreeSubject ex:Biology .
 +
 +
ex:Emma ex:degreeFrom ex:University_of_Valencia ;
 +
    ex:degreeSubject ex:Chemistry .
 +
 +
ex:degreeFrom rdfs:subPropertyOf ex:graduated .
 +
 +
ex:degreeSubject rdfs:subPropertyOf ex:expertise .
 +
 +
ex:Biology rdfs:label "Biology"@en,
 +
        "La Biologie"@fr ;
 +
    rdfs:comment "Biology is a natural science concerned with the study of life and living organisms, including their structure, function, growth, evolution, distribution, identification and taxonomy." .
 +
 +
ex:Chemistry rdfs:label "Chemistry"@en,
 +
        "La Chimie"@fr ;
 +
    rdfs:comment "Chemistry is a branch of physical science that studies the composition, structure, properties and change of matter."@en .
 +
 +
ex:University_of_California a ex:University .
 +
 +
ex:University_of_Valencia a ex:University .
 +
 +
ex:expertise rdfs:domain <http://xmlns.com/foaf/0.1/Person> ;
 +
    rdfs:range ex:Subject .
 +
 +
ex:graduated rdfs:domain <http://xmlns.com/foaf/0.1/Person> ;
 +
    rdfs:range ex:Higher_Education_Institution .
 +
 +
ex:University rdfs:subClassOf ex:Higher_Education_Institution .
 +
 +
ex:Cade a foaf:Person ;
 +
    ex:address [ a ex:Address ;
 +
            ex:city ex:Berkeley ;
 +
            ex:country ex:USA ;
 +
            ex:postalCode "94709"^^xsd:string ;
 +
            ex:state ex:California ;
 +
            ex:street "1516_Henry_Street"^^xsd:string ] ;
 +
    ex:age 27 ;
 +
    ex:characteristic ex:Kind ;
 +
    ex:degree [ ex:degreeField ex:Biology ;
 +
            ex:degreeLevel "Bachelor"^^xsd:string ;
 +
            ex:degreeSource ex:University_of_California ;
 +
            ex:year "2011-01-01"^^xsd:gYear ] ;
 +
    ex:interest ex:Bird,
 +
        ex:Ecology,
 +
        ex:Environmentalism,
 +
        ex:Photography,
 +
        ex:Travelling ;
 +
    ex:married ex:Mary ;
 +
    ex:meeting ex:Meeting1 ;
 +
    ex:visit ex:Canada,
 +
        ex:France,
 +
        ex:Germany ;
 +
    foaf:knows ex:Emma ;
 +
    ex:name "Cade_Tracey"^^xsd:string .
 +
 +
ex:Mary a ex:Student;
 +
    ex:age 26 ;
 +
    ex:characteristic ex:Kind ;
 +
    ex:interest ex:Biology,
 +
        ex:Chocolate,
 +
        ex:Hiking .
 +
 +
ex:Emma a foaf:Person ;
 +
    ex:address [ a ex:Address ;
 +
            ex:city ex:Valencia ;
 +
            ex:country ex:Spain ;
 +
            ex:postalCode "46020"^^xsd:string ;
 +
            ex:street "Carrer_de_la Guardia_Civil_20"^^xsd:string ] ;
 +
    ex:age 26 ;
 +
    ex:degree [ ex:degreeField ex:Chemistry ;
 +
            ex:degreeLevel "Master"^^xsd:string ;
 +
            ex:degreeSource ex:University_of_Valencia ;
 +
            ex:year "2015-01-01"^^xsd:gYear ] ;
 +
    ex:expertise ex:Air_Pollution,
 +
        ex:Toxic_Waste,
 +
        ex:Waste_Management,
 +
        ex:Bananas ;
 +
    ex:interest ex:Bike_Riding,
 +
        ex:Music,
 +
        ex:Travelling ;
 +
    ex:meeting ex:Meeting1 ;
 +
    ex:visit ( ex:Portugal ex:Italy ex:France ex:Germany ex:Denmark ex:Sweden ) ;
 +
    ex:name "Emma_Dominguez"^^xsd:string .
 +
 +
ex:Meeting1 a ex:Meeting ;
 +
    ex:date "August, 2014"^^xsd:string ;
 +
    ex:involved ex:Cade,
 +
        ex:Emma ;
 +
    ex:location ex:Paris .
 +
 +
ex:Paris a ex:City ;
 +
    ex:capitalOf ex:France ;
 +
    ex:locatedIn ex:France .
  
g.add((ex.Chemistry, RDFS.label, Literal("Chemistry")))
+
ex:France ex:capital ex:Paris .
g.add((ex.Chemistry, RDFS.label, Literal("La Chimie")))
 
g.add((ex.Chemistry, RDFS.comment, Literal("Chemistry is a branch of physical science that studies the composition, structure, properties and change of matter.")))
 
 
</syntaxhighlight>
 
</syntaxhighlight>

Latest revision as of 17:47, 4 March 2021

Lab 6: OWL 1 ("RDFS Plus / Basic OWL")

Topics

Basic OWL ontology programming with RDFlib and owlrl.

WebVOWL visualisation.

RDF and RDFS might be relevant too.

Classes/Vocabularies

Vocabulary:

  • OWL (sameAs, equivalentClass, equivalentProperty, differentFrom, disjointWith, inverseOf)
  • OWL (SymmetricProperty, AsymmetricProperty, ReflexiveProperty, IrreflexiveProperty, TransitiveProperty, FunctionalProperty, InverseFunctionalProperty)

Tasks

Task 1

Write OWL triples that corresponds to the following text. .If you can, try to build on your example from labs 2 and 7, or extend the triples at the bottom of the page. OWL can be imported from rdflib.namespace.

Cade and Emma are two different persons. The country USA above is the same as the DBpedia resource http://dbpedia.org/resource/United_States (dbr:United_States) and the GeoNames resource http://sws.geonames.org/6252001/ (gn:6252001). The person class (the RDF type the Cade and Emma resources) in your graph is the same as FOAF's, schema.org's and AKT's person classes (they are http://xmlns.com/foaf/0.1/Person, http://schema.org/Person, and http://www.aktors.org/ontology/portal#Person, respectively. Nothing can be any two of a person, a university, or a city at the same time. The property you have used in your RDF/RDFS graph to represent that 94709 is the US zip code of Berkeley, California in US is a subproperty of VCard's postal code-property (http://www.w3.org/2006/vcard/ns#postal-code). No two US cities can have the same postal code. The property you have used for Emma living in Valencia is the same property as FOAF's based near-property (http://xmlns.com/foaf/0.1/based_near), and it is the inverse of DBpedia's hometown property (http://dbpedia.org/ontology/hometown, dbo:hometown). (This is not completely precise: but "hometown" is perhaps the inverse of a subproperty of "based near".)


Task 2

g.add((ex.Cade, ex.married, ex.Mary))
g.add((ex.Cade, ex.livesWith, ex.Mary))
g.add((ex.Cade, ex.sibling, ex.Andrew))
g.add((ex.Cade, ex.hasFather, ex.Bob))
g.add((ex.Bob, ex.fatherOf, ex.Cade))

Look through the predicates(properties) above and add new triples for each one that describes them as any of the following: a reflexive , irreflexive, symmetric, asymmetric, transitive, functional, or an Inverse Functional Property. e.g

g.add((ex.married, RDF.type, OWL.SymmetricProperty))

Task 3

Print/Serialize the ontology. Then use owlrl like seen below to infer additional triples. Can you spot the many inferences?

# These three lines add inferred triples to the graph.
owl = owlrl.CombinedClosure.RDFS_OWLRL_Semantics(g, False, False, False)
owl.closure()
owl.flush_stored_triples()

Finally write the ontology to a TURTLE file, and try to visualise it using http://visualdataweb.de/webvowl/ . WebVOWL is oriented towards visualising classes and their properties, so the individuals may not show.


Useful Reading

Triples you can extend for the tasks

Python

import owlrl
from rdflib import Graph, Namespace, Literal, URIRef
from rdflib.namespace import RDF, RDFS, XSD, FOAF, OWL

g = Graph()

# Namespaces
ex = Namespace("http://example.org/")
dbp = Namespace("http://dbpedia.org/resource/")
geo = Namespace("http://sws.geonames.org/")
schema = Namespace("https://schema.org/")
akt = Namespace("http://www.aktors.org/ontology/portal#")
vcard = Namespace("http://www.w3.org/2006/vcard/ns#")

g.bind("ex", ex)
g.bind("owl", OWL)


# RDFS Tasks from last time.
g.add((ex.Cade, ex.degreeFrom, ex.University_of_California))
g.add((ex.Emma, ex.degreeFrom, ex.University_of_Valencia))
g.add((ex.Cade, ex.degreeSubject, ex.Biology))
g.add((ex.Emma, ex.degreeSubject, ex.Chemistry))
g.add((ex.University_of_California, RDF.type, ex.University))
g.add((ex.University_of_Valencia, RDF.type, ex.University))
g.add((ex.University, RDFS.subClassOf, ex.Higher_Education_Institution))
g.add((ex.expertise, RDFS.range, ex.Subject))
g.add((ex.expertise, RDFS.domain, FOAF.Person))
g.add((ex.degreeSubject, RDFS.subPropertyOf, ex.expertise))
g.add((ex.graduated, RDFS.range, ex.Higher_Education_Institution))
g.add((ex.graduated, RDFS.domain, FOAF.Person))
g.add((ex.degreeFrom, RDFS.subPropertyOf, ex.graduated))
g.add((ex.Biology, RDFS.label, Literal("Biology", lang="en")))
g.add((ex.Biology, RDFS.label, Literal("La Biologie", lang="fr")))
g.add((ex.Biology, RDFS.comment, Literal("Biology is a natural science concerned with the study of life and living organisms, including their structure, function, growth, evolution, distribution, identification and taxonomy.")))
g.add((ex.Chemistry, RDFS.label, Literal("Chemistry", lang="en")))
g.add((ex.Chemistry, RDFS.label, Literal("La Chimie", lang="fr")))
g.add((ex.Chemistry, RDFS.comment, Literal("Chemistry is a branch of physical science that studies the composition, structure, properties and change of matter.", lang="en")))

# Write OWL triples here

Turtle

@prefix ex: <http://example.org/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .

ex:Cade ex:degreeFrom ex:University_of_California ;
    ex:degreeSubject ex:Biology .

ex:Emma ex:degreeFrom ex:University_of_Valencia ;
    ex:degreeSubject ex:Chemistry .

ex:degreeFrom rdfs:subPropertyOf ex:graduated .

ex:degreeSubject rdfs:subPropertyOf ex:expertise .

ex:Biology rdfs:label "Biology"@en,
        "La Biologie"@fr ;
    rdfs:comment "Biology is a natural science concerned with the study of life and living organisms, including their structure, function, growth, evolution, distribution, identification and taxonomy." .

ex:Chemistry rdfs:label "Chemistry"@en,
        "La Chimie"@fr ;
    rdfs:comment "Chemistry is a branch of physical science that studies the composition, structure, properties and change of matter."@en .

ex:University_of_California a ex:University .

ex:University_of_Valencia a ex:University .

ex:expertise rdfs:domain <http://xmlns.com/foaf/0.1/Person> ;
    rdfs:range ex:Subject .

ex:graduated rdfs:domain <http://xmlns.com/foaf/0.1/Person> ;
    rdfs:range ex:Higher_Education_Institution .

ex:University rdfs:subClassOf ex:Higher_Education_Institution .

ex:Cade a foaf:Person ;
    ex:address [ a ex:Address ;
            ex:city ex:Berkeley ;
            ex:country ex:USA ;
            ex:postalCode "94709"^^xsd:string ;
            ex:state ex:California ;
            ex:street "1516_Henry_Street"^^xsd:string ] ;
    ex:age 27 ;
    ex:characteristic ex:Kind ;
    ex:degree [ ex:degreeField ex:Biology ;
            ex:degreeLevel "Bachelor"^^xsd:string ;
            ex:degreeSource ex:University_of_California ;
            ex:year "2011-01-01"^^xsd:gYear ] ;
    ex:interest ex:Bird,
        ex:Ecology,
        ex:Environmentalism,
        ex:Photography,
        ex:Travelling ;
    ex:married ex:Mary ;
    ex:meeting ex:Meeting1 ;
    ex:visit ex:Canada,
        ex:France,
        ex:Germany ;
    foaf:knows ex:Emma ;
    ex:name "Cade_Tracey"^^xsd:string .

ex:Mary a ex:Student;
    ex:age 26 ;
    ex:characteristic ex:Kind ;
    ex:interest ex:Biology,
        ex:Chocolate,
        ex:Hiking .

ex:Emma a foaf:Person ;
    ex:address [ a ex:Address ;
            ex:city ex:Valencia ;
            ex:country ex:Spain ;
            ex:postalCode "46020"^^xsd:string ;
            ex:street "Carrer_de_la Guardia_Civil_20"^^xsd:string ] ;
    ex:age 26 ;
    ex:degree [ ex:degreeField ex:Chemistry ;
            ex:degreeLevel "Master"^^xsd:string ;
            ex:degreeSource ex:University_of_Valencia ;
            ex:year "2015-01-01"^^xsd:gYear ] ;
    ex:expertise ex:Air_Pollution,
        ex:Toxic_Waste,
        ex:Waste_Management,
        ex:Bananas ;
    ex:interest ex:Bike_Riding,
        ex:Music,
        ex:Travelling ;
    ex:meeting ex:Meeting1 ;
    ex:visit ( ex:Portugal ex:Italy ex:France ex:Germany ex:Denmark ex:Sweden ) ;
    ex:name "Emma_Dominguez"^^xsd:string .

ex:Meeting1 a ex:Meeting ;
    ex:date "August, 2014"^^xsd:string ;
    ex:involved ex:Cade,
        ex:Emma ;
    ex:location ex:Paris .

ex:Paris a ex:City ;
    ex:capitalOf ex:France ;
    ex:locatedIn ex:France .

ex:France ex:capital ex:Paris .