Readings: Difference between revisions
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= | =Textbook= | ||
The | The textbook in INFO216 is ''Semantic Web for the Working Ontologist, Second Edition: Effective Modeling in RDFS and OWL by Dean Allemang and James Hendler (Jun 3, 2011). Morgan Kaufmann.'' '''The whole book is obligatory reading.''' | ||
=Other materials= | =Other materials= | ||
In addition, '''the materials listed below for each lecture | In addition, '''the materials listed below for each lecture are either mandatory or suggested reading.''' Because we are moving from Java to Python this spring, the reading list is not final. We will add more materials to each lecture in the next few weeks. | ||
'''The lectures and lectures notes are also part of the curriculum.''' | |||
Make sure you download the electronic resources to your own computer in good time before the exam. This is your own responsibility. That way you are safe if a site becomes unavailable or somehow damaged the last few days before the exam. | |||
''Note:'' to download some of the papers, you need to be inside UiB's network. Either use a computer directly on the UiB network or connect to your UiB account through VPN. | |||
=Lectures= | =Lectures= | ||
Below are the mandatory and suggested readings for each lecture. All the | Below are the mandatory and suggested readings for each lecture. All the textbook chapters are mandatory. [[Java-based readings]] are also available as an alternative to the Python-based materials. | ||
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* Web of Data | * Web of Data | ||
* INFO216 | * INFO216 | ||
* | * RDFLib | ||
* The programming project | * The programming project | ||
Mandatory readings: | Mandatory readings: | ||
* Chapters 1-2 in Allemang & Hendler. ''In text book.'' | * Chapters 1-2 in Allemang & Hendler. ''In the text book.'' | ||
* [http://www.youtube.com/watch?v=HeUrEh-nqtU Tim Berners-Lee talks about the semantic web] (mandatory) | * [http://www.youtube.com/watch?v=HeUrEh-nqtU Tim Berners-Lee talks about the semantic web] (mandatory) | ||
* [ | * [https://rdflib.readthedocs.io/ rdflib 4.2.2] | ||
* | ** Main page and Getting started with RDFLib | ||
* | * [[:File:S01-KG-8.pdf | Slides from the lecture]] | ||
Useful materials: | Useful materials: | ||
* [ | * [https://rdflib.readthedocs.io/en/stable/apidocs/modules.html RDFLib API documentation] | ||
* [https://github.com/RDFLib/rdflib RDFLib's GitHub page] | |||
* | |||
==Lecture 2: RDF== | ==Lecture 2: RDF== | ||
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Themes: | Themes: | ||
* RDF | * RDF | ||
* Programming RDF in | * Programming RDF in Python | ||
* Finding datasets and vocabularies for your projects | * Finding datasets and vocabularies for your projects | ||
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Mandatory readings: | Mandatory readings: | ||
* Chapter 3 in Allemang & Hendler. ''In text book.'' | * Chapter 3 in Allemang & Hendler. ''In the text book.'' | ||
* [https://www.w3.org/TR/rdf11-primer/ W3C's RDF 1.1 Primer] (mandatory) | * [https://www.w3.org/TR/rdf11-primer/ W3C's RDF 1.1 Primer] (mandatory) | ||
* We also continue with the Jena RDF materials from lecture 1: | * We also continue with the Jena RDF materials from lecture 1: | ||
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* [https://www.w3.org/TR/rdf11-concepts/ W3C's RDF 1.1 Concepts and Abstract Syntax] (cursory) | * [https://www.w3.org/TR/rdf11-concepts/ W3C's RDF 1.1 Concepts and Abstract Syntax] (cursory) | ||
** [https://jena.apache.org/documentation/javadoc/jena/ Package org.apache.jena.rdf.model] (supplementary, but necessary for the labs and project) | ** [https://jena.apache.org/documentation/javadoc/jena/ Package org.apache.jena.rdf.model] (supplementary, but necessary for the labs and project) | ||
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==Lecture 3: SPARQL== | ==Lecture 3: SPARQL== | ||
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Themes: | Themes: | ||
* SPARQL | * SPARQL | ||
* SPARQL Update | * SPARQL Update | ||
* Programming SPARQL Update in | * Programming SPARQL and SPARQL Update in Python | ||
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Mandatory readings: | Mandatory readings: | ||
* Chapter 5 in Allemang & Hendler. ''In text book.'' | * Chapter 5 in Allemang & Hendler. ''In the text book.'' | ||
* [http://www.w3.org/TR/sparql11-update/ SPARQL 1.1 Update Language] (Sections 1-3 are obligatory) | * [http://www.w3.org/TR/sparql11-update/ SPARQL 1.1 Update Language] (Sections 1-3 are obligatory) | ||
* [[:File:S03-SPARQL-12.pdf | Slides from the lecture]] | * [[:File:S03-SPARQL-12.pdf | Slides from the lecture]] | ||
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** UpdateFactory, UpdateAction | ** UpdateFactory, UpdateAction | ||
: (supplementary, but perhaps necessary for the labs and project) | : (supplementary, but perhaps necessary for the labs and project) | ||
--> | |||
==Lecture 4: Application Architecture== | ==Lecture 4: Application Architecture== | ||
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* Visualisation | * Visualisation | ||
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Mandatory readings: | Mandatory readings: | ||
* Chapter 4 in Allemang & Hendler. ''In text book.'' | * Chapter 4 in Allemang & Hendler. ''In the text book.'' | ||
* [http://jena.apache.org/about_jena/architecture.html Apache architecture overview] (mandatory, from lecture 1) | * [http://jena.apache.org/about_jena/architecture.html Apache architecture overview] (mandatory, from lecture 1) | ||
* [https://jena.apache.org/documentation/tdb/index.html Apache's TDB] (mandatory) | * [https://jena.apache.org/documentation/tdb/index.html Apache's TDB] (mandatory) | ||
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* [[:File:LohmannEtAl2016-VisualizingOntologiesWithVOWL.pdf | Lohmann et al. (2019): Visualizing Ontologies with VOWL. ''Semantic Web Journal.'']] ''Paper.'' | * [[:File:LohmannEtAl2016-VisualizingOntologiesWithVOWL.pdf | Lohmann et al. (2019): Visualizing Ontologies with VOWL. ''Semantic Web Journal.'']] ''Paper.'' | ||
* [http://vowl.visualdataweb.org/ VOWL: Visual Notation for OWL Ontologies] | * [http://vowl.visualdataweb.org/ VOWL: Visual Notation for OWL Ontologies] | ||
--> | |||
<!-- | <!-- | ||
* [[:File:S07-Visualisation-4.pdf | Slides from the lecture]] | * [[:File:S07-Visualisation-4.pdf | Slides from the lecture]] | ||
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* RDFS | * RDFS | ||
* Axioms, rules and entailment | * Axioms, rules and entailment | ||
* Programming RDFS in | * Programming RDFS in Python | ||
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Mandatory readings: | Mandatory readings: | ||
* Chapters 6-7 in Allemang & Hendler. ''In text book.'' | * Chapters 6-7 in Allemang & Hendler. ''In the text book.'' | ||
* [http://www.w3.org/TR/rdf-schema/ W3C's RDF Schema 1.1] (mandatory) | * [http://www.w3.org/TR/rdf-schema/ W3C's RDF Schema 1.1] (mandatory) | ||
* [[:File:S05-RDFS-10.pdf | Slides from the lecture]] | * [[:File:S05-RDFS-10.pdf | Slides from the lecture]] | ||
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Case-based examples: | Case-based examples: | ||
* [[:File:S5_RDFS_Example.pdf | RDFS Eating vegetables case]] | * [[:File:S5_RDFS_Example.pdf | RDFS Eating vegetables case]] | ||
--> | |||
==Lecture 6: RDFS Plus== | ==Lecture 6: RDFS Plus== | ||
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* Basic OWL concepts | * Basic OWL concepts | ||
* Axioms, rules and entailments | * Axioms, rules and entailments | ||
* Programming basic OWL in | * Programming basic OWL in Python | ||
<!-- | |||
Mandatory readings: | Mandatory readings: | ||
* Chapter 8 in Allemang & Hendler. ''In text book.'' | * Chapter 8 in Allemang & Hendler. ''In the text book.'' | ||
* [[:File:S06-RDFSPlus-4.pdf | Slides from the lecture.]] | * [[:File:S06-RDFSPlus-4.pdf | Slides from the lecture.]] | ||
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OWL helpful clarifications: | OWL helpful clarifications: | ||
* [[:File:OWL-example_I.pdf | owl:InverseFuctionalProperty vs owl:propertyDisjointWith]] | * [[:File:OWL-example_I.pdf | owl:InverseFuctionalProperty vs owl:propertyDisjointWith]] | ||
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==Lecture 7 and 8: Vocabularies== | ==Lecture 7 and 8: Vocabularies== | ||
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* LOD vocabularies and ontologies | * LOD vocabularies and ontologies | ||
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Mandatory readings: | Mandatory readings: | ||
* Chapters 9-10 and 13 in Allemang & Hendler. ''In text book.'' | * Chapters 9-10 and 13 in Allemang & Hendler. ''In the text book.'' | ||
* [http://lov.okfn.org/dataset/lov/ Linked Open Vocabularies (LOV)] | * [http://lov.okfn.org/dataset/lov/ Linked Open Vocabularies (LOV)] | ||
* [http://stats.lod2.eu/ LODstats] | * [http://stats.lod2.eu/ LODstats] | ||
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** [http://www.musicontology.com/ Music Ontology (mo)] | ** [http://www.musicontology.com/ Music Ontology (mo)] | ||
: '''This is what we expect you to know about each vocabulary:''' Its purpose and where and how it can be used. You should know its most central 3-6 classes and properties be able to explain its basic structure. It is less important to get all the names and prefixes 100% right: we do not expect you to learn every little detail by heart. ''schema.org'' is less important because you have already had about it in INFO116. | : '''This is what we expect you to know about each vocabulary:''' Its purpose and where and how it can be used. You should know its most central 3-6 classes and properties be able to explain its basic structure. It is less important to get all the names and prefixes 100% right: we do not expect you to learn every little detail by heart. ''schema.org'' is less important because you have already had about it in INFO116. | ||
--> | |||
==Lecture 9 and 10: Linked Data Resources== | ==Lecture 9 and 10: Linked Data Resources== | ||
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** and others | ** and others | ||
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Mandatory readings: | Mandatory readings: | ||
* [[:File:BizerHeathBernersLee-LinkedData2009-TheStorySoFar.pdf | Bizer, C., Heath, T., & Berners-Lee, T. (2009). Linked data-the story so far. Semantic services, interoperability and web applications: emerging concepts, 205-227.]] | * [[:File:BizerHeathBernersLee-LinkedData2009-TheStorySoFar.pdf | Bizer, C., Heath, T., & Berners-Lee, T. (2009). Linked data-the story so far. Semantic services, interoperability and web applications: emerging concepts, 205-227.]] | ||
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* [https://wordnet.princeton.edu/ WordNet - A lexical database for English] | * [https://wordnet.princeton.edu/ WordNet - A lexical database for English] | ||
* [http://live.babelnet.org/about BabelNet] | * [http://live.babelnet.org/about BabelNet] | ||
--> | |||
==Lecture 11 and 12: Web APIs== | ==Lecture 11 and 12: Web APIs== | ||
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* Semantic workflows | * Semantic workflows | ||
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Mandatory readings: | Mandatory readings: | ||
* [http://json.org/ JSON Syntax] (mandatory) | * [http://json.org/ JSON Syntax] (mandatory) | ||
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** [http://www.youtube.com/watch?v=4x_xzT5eF5Q What is Linked Data?] Short video introduction to Linked Data by Manu Sporny | ** [http://www.youtube.com/watch?v=4x_xzT5eF5Q What is Linked Data?] Short video introduction to Linked Data by Manu Sporny | ||
** [http://www.youtube.com/watch?v=vioCbTo3C-4 What is JSON-LD?] Short video introduction to JSON-LD by Manu Sporny | ** [http://www.youtube.com/watch?v=vioCbTo3C-4 What is JSON-LD?] Short video introduction to JSON-LD by Manu Sporny | ||
--> | |||
==Lecture 13: OWL== | ==Lecture 13: OWL== | ||
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* Advanced OWL | * Advanced OWL | ||
* Axioms, rules and entailments | * Axioms, rules and entailments | ||
* Programming advanced OWL in | * Programming advanced OWL in Python | ||
<!-- | |||
Mandatory readings: | Mandatory readings: | ||
* Chapters 11-12 in Allemang & Hendler. ''In text book.'' | * Chapters 11-12 in Allemang & Hendler. ''In the text book.'' | ||
* [[:File:S11-OWL-15-utlagt.pdf | Slides from the lecture]] | * [[:File:S11-OWL-15-utlagt.pdf | Slides from the lecture]] | ||
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* [http://vowl.visualdataweb.org/webvowl/index.html#sioc WebVOWL] (cursory) | * [http://vowl.visualdataweb.org/webvowl/index.html#sioc WebVOWL] (cursory) | ||
* [https://jena.apache.org/documentation/ontology/ Jena Ontology API] (we will most likely not go into this) (cursory) | * [https://jena.apache.org/documentation/ontology/ Jena Ontology API] (we will most likely not go into this) (cursory) | ||
--> | |||
==Lecture 14: OWL DL== | ==Lecture 14: OWL DL== | ||
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* Decision problems | * Decision problems | ||
* OWL-DL | * OWL-DL | ||
* Programming with OWL-DL reasoners in | * Programming with OWL-DL reasoners in Python | ||
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Mandatory readings: | Mandatory readings: | ||
* [[:File:S12-OWL-DL-10.pdf | Slides from the lecture]] | * [[:File:S12-OWL-DL-10.pdf | Slides from the lecture]] | ||
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** ''Cursory'', quickly gets mathematical after the introduction. In particular, sections 2.2.2.3-4 about fixpoint semantics apply to TBoxes with cyclic definitions, which we do not consider in this course. We also do not consider the stuff about rules, epistemics, and reasoning from section 2.2.5 on. | ** ''Cursory'', quickly gets mathematical after the introduction. In particular, sections 2.2.2.3-4 about fixpoint semantics apply to TBoxes with cyclic definitions, which we do not consider in this course. We also do not consider the stuff about rules, epistemics, and reasoning from section 2.2.5 on. | ||
* [http://www.cs.man.ac.uk/~ezolin/dl/ Complexity of Reasoning in Description Logics. Powered by Evgeny Zolin.] (informative) | * [http://www.cs.man.ac.uk/~ezolin/dl/ Complexity of Reasoning in Description Logics. Powered by Evgeny Zolin.] (informative) | ||
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==Lecture 15: Ontology Development and Evaluation== | ==Lecture 15: Ontology Development and Evaluation== | ||
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* Ontology Development 101 method | * Ontology Development 101 method | ||
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Mandatory readings: | Mandatory readings: | ||
* Chapters 14-16 in Allemang & Hendler. ''In text book.'' | * Chapters 14-16 in Allemang & Hendler. ''In the text book.'' | ||
* [http://liris.cnrs.fr/alain.mille/enseignements/Ecole_Centrale/What%20is%20an%20ontology%20and%20why%20we%20need%20it.htm Noy & McGuinness (2001): Ontology Development 101: A Guide to Creating Your First Ontology.] ''Paper.'' | * [http://liris.cnrs.fr/alain.mille/enseignements/Ecole_Centrale/What%20is%20an%20ontology%20and%20why%20we%20need%20it.htm Noy & McGuinness (2001): Ontology Development 101: A Guide to Creating Your First Ontology.] ''Paper.'' | ||
* [[:File:S13-OntologyDevelopment-4.pdf | Slides from the lecture]] | * [[:File:S13-OntologyDevelopment-4.pdf | Slides from the lecture]] | ||
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Useful materials: | Useful materials: | ||
* [http://www.sciencedirect.com/science/article/pii/S095741741101640X Sicilia et al. (2012): Empirical findings on ontology metrics.] ''Paper.'' (cursory) | * [http://www.sciencedirect.com/science/article/pii/S095741741101640X Sicilia et al. (2012): Empirical findings on ontology metrics.] ''Paper.'' (cursory) | ||
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| | ||
<div class="credits" style="text-align: right; direction: ltr; margin-left: 1em;">''INFO216, UiB, 2017-2020, Andreas L. Opdahl (c)''</div> | <div class="credits" style="text-align: right; direction: ltr; margin-left: 1em;">''INFO216, UiB, 2017-2020, Andreas L. Opdahl (c)''</div> | ||
Revision as of 14:51, 16 January 2020
Textbook
The textbook in INFO216 is Semantic Web for the Working Ontologist, Second Edition: Effective Modeling in RDFS and OWL by Dean Allemang and James Hendler (Jun 3, 2011). Morgan Kaufmann. The whole book is obligatory reading.
Other materials
In addition, the materials listed below for each lecture are either mandatory or suggested reading. Because we are moving from Java to Python this spring, the reading list is not final. We will add more materials to each lecture in the next few weeks.
The lectures and lectures notes are also part of the curriculum.
Make sure you download the electronic resources to your own computer in good time before the exam. This is your own responsibility. That way you are safe if a site becomes unavailable or somehow damaged the last few days before the exam.
Note: to download some of the papers, you need to be inside UiB's network. Either use a computer directly on the UiB network or connect to your UiB account through VPN.
Lectures
Below are the mandatory and suggested readings for each lecture. All the textbook chapters are mandatory. Java-based readings are also available as an alternative to the Python-based materials.
Lecture 1: Knowledge Graphs
Themes:
- Web of Data
- INFO216
- RDFLib
- The programming project
Mandatory readings:
- Chapters 1-2 in Allemang & Hendler. In the text book.
- Tim Berners-Lee talks about the semantic web (mandatory)
- rdflib 4.2.2
- Main page and Getting started with RDFLib
- Slides from the lecture
Useful materials:
Lecture 2: RDF
Themes:
- RDF
- Programming RDF in Python
- Finding datasets and vocabularies for your projects
Lecture 3: SPARQL
Themes:
- SPARQL
- SPARQL Update
- Programming SPARQL and SPARQL Update in Python
Lecture 4: Application Architecture
Themes:
- Application components
- Triple stores
- Visualisation
Lecture 5: RDFS
Themes:
- RDFS
- Axioms, rules and entailment
- Programming RDFS in Python
Lecture 6: RDFS Plus
Themes:
- Basic OWL concepts
- Axioms, rules and entailments
- Programming basic OWL in Python
Lecture 7 and 8: Vocabularies
Themes:
- LOD vocabularies and ontologies
Lecture 9 and 10: Linked Data Resources
Themes:
- Important Linked Open Datasets
- DBpedia
- LinkedGeoData
- GeoNames
- Wikidata
- and others
Lecture 11 and 12: Web APIs
Themes:
- JSON, JSON-LD
- Semantic web services
- Semantic workflows
Lecture 13: OWL
Themes:
- Advanced OWL
- Axioms, rules and entailments
- Programming advanced OWL in Python
Lecture 14: OWL DL
Themes:
- Description logic
- Decision problems
- OWL-DL
- Programming with OWL-DL reasoners in Python
Lecture 15: Ontology Development and Evaluation
Themes:
- Ontology Development 101 method
INFO216, UiB, 2017-2020, Andreas L. Opdahl (c)