Difference between revisions of "Lecture plan"

(Tentative lecture plan H2016)
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Tuesdays 10:15-12:00 in the Large Auditorium (2144) in the HIB Data building's 2nd floor (2. etg.).
 
Tuesdays 10:15-12:00 in the Large Auditorium (2144) in the HIB Data building's 2nd floor (2. etg.).
Relevant chapters and pages in the book are given for each lecture.  Note the useful glossary in '''Appendix Two'''.
+
Relevant chapters and pages in the [[https://wiki.uib.no/mol204/index.php/Curriculum|book]] are given for each lecture.  Note the useful glossary in '''Appendix Two'''.
  
 
{|border="1" cellpadding="3" cellspacing="0"
 
{|border="1" cellpadding="3" cellspacing="0"
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!bgcolor="#C0F0C0" |Topic
 
!bgcolor="#C0F0C0" |Topic
 
!bgcolor="#C0F0C0" |Teacher
 
!bgcolor="#C0F0C0" |Teacher
!bgcolor="#C0F0C0" |[[#Curriculum|Book]] chapters (tentative)
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!bgcolor="#C0F0C0" |Book chapters
 
|-
 
|-
 
| 23 Aug
 
| 23 Aug
 
| First gathering - about the course (you have to be there!)
 
| First gathering - about the course (you have to be there!)
 
| Rein & Nathalie
 
| Rein & Nathalie
| Preface ['''Ch 1''']
+
| Preface ['''1''']
 
|-
 
|-
 
| 30 Aug
 
| 30 Aug
 
| Introduction: evolution and protein structure
 
| Introduction: evolution and protein structure
 
| Rein
 
| Rein
| ['''Ch 12''']
+
| ['''12''']
 
|-
 
|-
 
| 6 Sep
 
| 6 Sep
 
| Databases
 
| Databases
 
| Rein
 
| Rein
| ['''Ch 2''']
+
| ['''2''']
 
|-
 
|-
 
| bgcolor="#C0C0C0" | 8-9 Sep
 
| bgcolor="#C0C0C0" | 8-9 Sep
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| Sequence alignment and scoring
 
| Sequence alignment and scoring
 
| Rein
 
| Rein
| ['''Ch 3 pp31-37; 41-50''']
+
| ['''3; pp31-37; 41-50''']
 
|-
 
|-
 
|20 Sep
 
|20 Sep
 
| Pairwise alignments with dynamic programming
 
| Pairwise alignments with dynamic programming
 
| Rein
 
| Rein
| ['''Ch 3 pp37-41''']
+
| ['''3; pp37-41''']
 
|-
 
|-
 
| 27 Sep
 
| 27 Sep
 
| Sequence searches
 
| Sequence searches
 
| Rein
 
| Rein
| ['''Ch 4''']
+
| ['''4''']
 
|-
 
|-
 
| bgcolor="#C0C0C0" | 29-30 Sep
 
| bgcolor="#C0C0C0" | 29-30 Sep
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| From genome to genes
 
| From genome to genes
 
| Michael
 
| Michael
| 9 (8 & 9?)
+
| 9
 
|-
 
|-
 
| 11 Oct
 
| 11 Oct
 
| Multiple sequence alignment
 
| Multiple sequence alignment
 
| Rein
 
| Rein
| ['''Ch 5''']
+
| ['''5''']
 
|-
 
|-
 
| 18 Oct
 
| 18 Oct

Revision as of 10:15, 8 August 2016

Tentative lecture plan H2016

Tuesdays 10:15-12:00 in the Large Auditorium (2144) in the HIB Data building's 2nd floor (2. etg.). Relevant chapters and pages in the [[1]] are given for each lecture. Note the useful glossary in Appendix Two.

Lecture plan H2015
Date Topic Teacher Book chapters
23 Aug First gathering - about the course (you have to be there!) Rein & Nathalie Preface [1]
30 Aug Introduction: evolution and protein structure Rein [12]
6 Sep Databases Rein [2]
8-9 Sep PC lab: Databases Bojan + +
13 Sep Sequence alignment and scoring Rein [3; pp31-37; 41-50]
20 Sep Pairwise alignments with dynamic programming Rein [3; pp37-41]
27 Sep Sequence searches Rein [4]
29-30 Sep PC lab: Introduction to case/Sequence searches Bojan + +
4 Oct From genome to genes Michael 9
11 Oct Multiple sequence alignment Rein [5]
18 Oct No lecture
25 Oct Protein structure basics and structure-function relationship Nathalie 12
27-28 Oct PC lab: Multiple Sequence Alignments Bojan + +
1 Nov Protein Structure Visualization, Comparison and Classification Nathalie 13
8 Nov Protein secondary structure prediction Nathalie 14
15 Nov Protein tertiary structure prediction I Nathalie 15
17-18 Nov PC lab: Structures Bojan + +
22 Nov Protein tertiary structure prediction II Nathalie 15
29 Nov Systems bioinformatics Rein [Special text t.b.a. ]
6 Dec Q&A Rein, Nathalie
19 Dec Final Exam

.

Teachers and Assistants

  • Nathalie Reuter, MBI/CBU (lecturer, course responsible)
  • Rein Aasland, MBI (lecturer)
  • Michael Dondrup, II/CBU (lecturer)
  • Bojan Kretnic, MBI/CBU (teaching assistant)