Difference between revisions of "Lecture plan"

(Tentative lecture plan H2016)
(Tentative lecture plan H2016)
Line 14: Line 14:
 
| First gathering - about the course (you have to be there!)
 
| First gathering - about the course (you have to be there!)
 
| Rein & Nathalie
 
| Rein & Nathalie
| Preface ['''1''']
+
| Preface '''1'''
 
|-
 
|-
 
| 30 Aug
 
| 30 Aug
 
| Introduction: evolution and protein structure
 
| Introduction: evolution and protein structure
 
| Rein
 
| Rein
| ['''12''']
+
| '''12'''
 
|-
 
|-
 
| 6 Sep
 
| 6 Sep
 
| Databases
 
| Databases
 
| Rein
 
| Rein
| ['''2''']
+
| '''2'''
 
|-
 
|-
 
| bgcolor="#C0C0C0" | 8-9 Sep
 
| bgcolor="#C0C0C0" | 8-9 Sep
Line 34: Line 34:
 
| Sequence alignment and scoring
 
| Sequence alignment and scoring
 
| Rein
 
| Rein
| ['''3; pp31-37; 41-50''']
+
| '''3; pp31-37; 41-50'''
 
|-
 
|-
 
|20 Sep
 
|20 Sep
 
| Pairwise alignments with dynamic programming
 
| Pairwise alignments with dynamic programming
 
| Rein
 
| Rein
| ['''3; pp37-41''']
+
| '''3; pp37-41'''
 
|-
 
|-
 
| 27 Sep
 
| 27 Sep
 
| Sequence searches
 
| Sequence searches
 
| Rein
 
| Rein
| ['''4''']
+
| '''4'''
 
|-
 
|-
 
| bgcolor="#C0C0C0" | 29-30 Sep
 
| bgcolor="#C0C0C0" | 29-30 Sep
Line 59: Line 59:
 
| Multiple sequence alignment
 
| Multiple sequence alignment
 
| Rein
 
| Rein
| ['''5''']
+
| '''5'''
 
|-
 
|-
 
| 18 Oct
 
| 18 Oct

Revision as of 10:16, 8 August 2016

Tentative lecture plan H2016

Tuesdays 10:15-12:00 in the Large Auditorium (2144) in the HIB Data building's 2nd floor (2. etg.). Relevant chapters and pages in the [[1]] are given for each lecture. Note the useful glossary in Appendix Two.

Lecture plan H2015
Date Topic Teacher Book chapters
23 Aug First gathering - about the course (you have to be there!) Rein & Nathalie Preface 1
30 Aug Introduction: evolution and protein structure Rein 12
6 Sep Databases Rein 2
8-9 Sep PC lab: Databases Bojan + +
13 Sep Sequence alignment and scoring Rein 3; pp31-37; 41-50
20 Sep Pairwise alignments with dynamic programming Rein 3; pp37-41
27 Sep Sequence searches Rein 4
29-30 Sep PC lab: Introduction to case/Sequence searches Bojan + +
4 Oct From genome to genes Michael 9
11 Oct Multiple sequence alignment Rein 5
18 Oct No lecture
25 Oct Protein structure basics and structure-function relationship Nathalie 12
27-28 Oct PC lab: Multiple Sequence Alignments Bojan + +
1 Nov Protein Structure Visualization, Comparison and Classification Nathalie 13
8 Nov Protein secondary structure prediction Nathalie 14
15 Nov Protein tertiary structure prediction I Nathalie 15
17-18 Nov PC lab: Structures Bojan + +
22 Nov Protein tertiary structure prediction II Nathalie 15
29 Nov Systems bioinformatics Rein [Special text t.b.a. ]
6 Dec Q&A Rein, Nathalie
19 Dec Final Exam

.

Teachers and Assistants

  • Nathalie Reuter, MBI/CBU (lecturer, course responsible)
  • Rein Aasland, MBI (lecturer)
  • Michael Dondrup, II/CBU (lecturer)
  • Bojan Kretnic, MBI/CBU (teaching assistant)