Difference between revisions of "Lecture plan"

(Tentative lecture plan H2016)
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!bgcolor="#C0F0C0" |Book chapters
 
!bgcolor="#C0F0C0" |Book chapters
 
|-
 
|-
| 23 Aug
+
| 21 Aug
 
| First gathering - about the course (you have to be there!)
 
| First gathering - about the course (you have to be there!)
 
| Rein & Nathalie
 
| Rein & Nathalie
 
| Preface '''1'''
 
| Preface '''1'''
 
|-
 
|-
| 30 Aug
+
| 28 Aug
 
| Introduction: evolution and protein structure
 
| Introduction: evolution and protein structure
 
| Rein
 
| Rein
 
| '''12''' and '''3''' (pp31-33)
 
| '''12''' and '''3''' (pp31-33)
 
|-
 
|-
| 6 Sep
+
| 4 Sep
 
| Databases
 
| Databases
 
| Rein
 
| Rein
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| bgcolor="#C0C0C0" |  
 
| bgcolor="#C0C0C0" |  
 
|-
 
|-
| 13 Sep
+
|11 Sep
 
| Sequence alignment and scoring
 
| Sequence alignment and scoring
 
| Rein
 
| Rein
 
| '''3''' (pp31-37; 41-50)
 
| '''3''' (pp31-37; 41-50)
 
|-
 
|-
|20 Sep
+
|18 Sep
 
| Pairwise alignments with dynamic programming
 
| Pairwise alignments with dynamic programming
 
| Rein
 
| Rein
 
| '''3''' (pp37-41)
 
| '''3''' (pp37-41)
 
|-
 
|-
| 27 Sep
+
| 25 Sep
 
| Sequence searches
 
| Sequence searches
 
| Rein
 
| Rein
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| bgcolor="#C0C0C0" |  
 
| bgcolor="#C0C0C0" |  
 
|-
 
|-
| 4 Oct
+
| 2 Oct
 
| From genome to genes
 
| From genome to genes
 
| Michael
 
| Michael
 
|'''9'''
 
|'''9'''
 
|-
 
|-
| 11 Oct
+
| 9 Oct
 
| Multiple sequence alignment
 
| Multiple sequence alignment
 
| Rein
 
| Rein
 
| '''5'''
 
| '''5'''
 
|-
 
|-
| 18 Oct
+
| 16 Oct
 
| No lecture
 
| No lecture
 
|-
 
|-
| 25 Oct
+
| 23 Oct
 
| Protein structure basics and structure-function relationship
 
| Protein structure basics and structure-function relationship
 
| Nathalie
 
| Nathalie
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| bgcolor="#C0C0C0" |  
 
| bgcolor="#C0C0C0" |  
 
|-
 
|-
| 1 Nov
+
| 30 Oct
 
| Protein Structure Visualization, Comparison and Classification
 
| Protein Structure Visualization, Comparison and Classification
 
| Nathalie
 
| Nathalie
 
| '''13'''
 
| '''13'''
 
|-
 
|-
| 8 Nov
+
| 6 Nov
 
| Protein secondary structure prediction
 
| Protein secondary structure prediction
 
| Nathalie
 
| Nathalie
 
| '''14'''
 
| '''14'''
 
|-
 
|-
| 15 Nov
+
| 13 Nov
 
| Protein tertiary structure prediction I
 
| Protein tertiary structure prediction I
 
| Nathalie
 
| Nathalie
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| bgcolor="#C0C0C0" |  
 
| bgcolor="#C0C0C0" |  
 
|-
 
|-
| 22 Nov
+
| 20 Nov
 
| Protein tertiary structure prediction II
 
| Protein tertiary structure prediction II
 
| Nathalie
 
| Nathalie
 
| '''15'''
 
| '''15'''
 
|-
 
|-
| 29 Nov
+
| 27 Nov
| Systems bioinformatics  
+
| Systems bioinformatics (?)
 
| Rein
 
| Rein
 
| ['''Special text t.b.a. ''']
 
| ['''Special text t.b.a. ''']
 
|-
 
|-
| 6 Dec
+
| 4 Dec
 
| Q&A
 
| Q&A
| Rein, Nathalie
+
| Nathalie
 
|  
 
|  
 
|-
 
|-
| 19 Dec
+
| 11 Dec, 9:00-13:00
| Final Exam
+
| Final written exam
 
|  
 
|  
 
|  
 
|  
Line 119: Line 119:
 
==Teachers and Assistants==
 
==Teachers and Assistants==
 
* Nathalie Reuter, MBI/CBU (lecturer, course responsible)
 
* Nathalie Reuter, MBI/CBU (lecturer, course responsible)
* Rein Aasland,  MBI (lecturer)
 
 
* Michael Dondrup, II/CBU (lecturer)
 
* Michael Dondrup, II/CBU (lecturer)
 
* Bojan Kretnic, MBI/CBU (teaching assistant)
 
* Bojan Kretnic, MBI/CBU (teaching assistant)

Revision as of 13:23, 20 August 2017

Tentative lecture plan H2016

Tuesdays 10:15-12:00 in the Large Auditorium (2144) in the HIB Data building's 2nd floor (2. etg.). Relevant chapters and pages in the book are given for each lecture. Note the useful glossary in Appendix Two.

Lecture plan H2016
Date Topic Teacher Book chapters
21 Aug First gathering - about the course (you have to be there!) Rein & Nathalie Preface 1
28 Aug Introduction: evolution and protein structure Rein 12 and 3 (pp31-33)
4 Sep Databases Rein 2 (Literature)
8-9 Sep PC lab: Databases Bojan + +
11 Sep Sequence alignment and scoring Rein 3 (pp31-37; 41-50)
18 Sep Pairwise alignments with dynamic programming Rein 3 (pp37-41)
25 Sep Sequence searches Rein 4
29-30 Sep PC lab: Introduction to case/Sequence searches Bojan + +
2 Oct From genome to genes Michael 9
9 Oct Multiple sequence alignment Rein 5
16 Oct No lecture
23 Oct Protein structure basics and structure-function relationship Nathalie 12
27-28 Oct PC lab: Multiple Sequence Alignments Bojan + +
30 Oct Protein Structure Visualization, Comparison and Classification Nathalie 13
6 Nov Protein secondary structure prediction Nathalie 14
13 Nov Protein tertiary structure prediction I Nathalie 15
17-18 Nov PC lab: Structures Bojan + +
20 Nov Protein tertiary structure prediction II Nathalie 15
27 Nov Systems bioinformatics (?) Rein [Special text t.b.a. ]
4 Dec Q&A Nathalie
11 Dec, 9:00-13:00 Final written exam

.

Teachers and Assistants

  • Nathalie Reuter, MBI/CBU (lecturer, course responsible)
  • Michael Dondrup, II/CBU (lecturer)
  • Bojan Kretnic, MBI/CBU (teaching assistant)