Difference between revisions of "Lecture plan"

(Tentative lecture plan H2017)
(Tentative lecture plan H2017)
Line 17: Line 17:
 
|-
 
|-
 
| 28 Aug
 
| 28 Aug
| Introduction: Introduction to bioinformatics, terminology, basics of protein structure
+
| Lect.1 Introduction: Introduction to bioinformatics, terminology, basics of protein structure
 
| Nathalie
 
| Nathalie
 
| ''''1'''' and '''12 (173-182)'''
 
| ''''1'''' and '''12 (173-182)'''
 
|-
 
|-
 
| 4 Sep
 
| 4 Sep
| Databases
+
| Lect.2 Biological Databases
 
| Nathalie
 
| Nathalie
 
| '''2'''
 
| '''2'''
Line 32: Line 32:
 
|-
 
|-
 
|11 Sep
 
|11 Sep
| Sequence alignment and scoring
+
| Lect.3 Sequence alignment and scoring
 
| Nathalie
 
| Nathalie
 
| '''3''' (pp31-37; 41-50)
 
| '''3''' (pp31-37; 41-50)
 
|-
 
|-
 
|18 Sep
 
|18 Sep
| Pairwise alignments with dynamic programming
+
| Lect.4 Pairwise alignments with dynamic programming
 
| Nathalie
 
| Nathalie
 
| '''3''' (pp37-41)
 
| '''3''' (pp37-41)
 
|-
 
|-
 
| 25 Sep
 
| 25 Sep
| Sequence searches
+
| Lect.5 Sequence searches
 
| Nathalie
 
| Nathalie
 
| '''4'''
 
| '''4'''
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|-
 
|-
 
| 2 Oct
 
| 2 Oct
| Multiple sequence alignment
+
| Lect.6 Multiple sequence alignment
 
| Nathalie
 
| Nathalie
 
| '''5'''
 
| '''5'''
 
|-
 
|-
 
| 9 Oct
 
| 9 Oct
| Molecular Phylogenetics
+
| Lect.7 Molecular Phylogenetics
 
| Bojan
 
| Bojan
 
|'''10''' and  '''11'''
 
|'''10''' and  '''11'''
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|-
 
|-
 
| 23 Oct
 
| 23 Oct
| Protein structure basics and structure-function relationship
+
| Lect.8 Protein structure basics and structure-function relationship
 
| Nathalie
 
| Nathalie
 
| '''12'''
 
| '''12'''
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|-
 
|-
 
| 30 Oct
 
| 30 Oct
| Protein Structure Visualization, Comparison and Classification
+
| Lect.9 Protein Structure Visualization, Comparison and Classification
 
| Nathalie
 
| Nathalie
 
| '''13'''
 
| '''13'''
 
|-
 
|-
 
| 6 Nov
 
| 6 Nov
| Protein secondary structure prediction
+
| Lect.10 Protein secondary structure prediction
 
| Nathalie
 
| Nathalie
 
| '''14'''
 
| '''14'''
 
|-
 
|-
 
| 13 Nov
 
| 13 Nov
| Protein tertiary structure prediction I
+
| Lect. 11 Protein tertiary structure prediction I
 
| Nathalie
 
| Nathalie
 
| '''15'''
 
| '''15'''
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|-
 
|-
 
| 20 Nov
 
| 20 Nov
| Protein tertiary structure prediction II
+
| Lect.12 Protein tertiary structure prediction II
 
| Nathalie
 
| Nathalie
 
| '''15'''
 
| '''15'''
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|-
 
|-
 
| 27 Nov
 
| 27 Nov
| From Genomes to Genes
+
| Lect.13 From Genomes to Genes
 
| Michael Dondrup
 
| Michael Dondrup
 
| '''9'''
 
| '''9'''

Revision as of 12:38, 4 September 2017

Tentative lecture plan H2017

Mondays 14:15-16:00 in the Large Auditorium (2144) in the HIB Data building's 2nd floor (2. etg.). Relevant chapters and pages in the book are given for each lecture. Note the useful glossary in Appendix Two.

Lecture plan H2016
Date Topic Teacher Book chapters
21 Aug First gathering - about the course (you have to be there!) Nathalie Preface 1
28 Aug Lect.1 Introduction: Introduction to bioinformatics, terminology, basics of protein structure Nathalie '1' and 12 (173-182)
4 Sep Lect.2 Biological Databases Nathalie 2
6-8 Sep PC lab A: Databases Bojan + +
11 Sep Lect.3 Sequence alignment and scoring Nathalie 3 (pp31-37; 41-50)
18 Sep Lect.4 Pairwise alignments with dynamic programming Nathalie 3 (pp37-41)
25 Sep Lect.5 Sequence searches Nathalie 4
27-29 Sep PC lab B: Introduction to case/Sequence searches Bojan + +
2 Oct Lect.6 Multiple sequence alignment Nathalie 5
9 Oct Lect.7 Molecular Phylogenetics Bojan 10 and 11
16 Oct No lecture
23 Oct Lect.8 Protein structure basics and structure-function relationship Nathalie 12
18-20 Oct PC lab C: Multiple Sequence Alignments Bojan + +
30 Oct Lect.9 Protein Structure Visualization, Comparison and Classification Nathalie 13
6 Nov Lect.10 Protein secondary structure prediction Nathalie 14
13 Nov Lect. 11 Protein tertiary structure prediction I Nathalie 15
15-17 Nov PC lab D: Structures Bojan + +
20 Nov Lect.12 Protein tertiary structure prediction II Nathalie 15
22-24 Nov PC lab E: Structure Prediction Bojan + +
27 Nov Lect.13 From Genomes to Genes Michael Dondrup 9
4 Dec Q&A Nathalie++
12 Dec, 9:00-13:00 Final written exam

.

Teachers and Assistants

  • Nathalie Reuter, MBI/CBU (lecturer, course responsible)
  • Michael Dondrup, II/CBU (lecturer)
  • Bojan Kretnic, MBI/CBU (teaching assistant)