Lecture plan

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Tentative lecture plan H2016

Tuesdays 10:15-12:00 in the Large Auditorium (2144) in the HIB Data building's 2nd floor (2. etg.). Relevant chapters and pages in the book are given for each lecture. Note the useful glossary in Appendix Two.

Lecture plan H2016
Date Topic Teacher Book chapters
21 Aug First gathering - about the course (you have to be there!) Nathalie Preface 1
28 Aug Introduction: evolution and protein structure Nathalie 12 and 3 (pp31-33)
4 Sep Databases Nathalie 2 (Literature)
6-8 Sep PC lab A: Databases Bojan + +
11 Sep Sequence alignment and scoring Nathalie 3 (pp31-37; 41-50)
18 Sep Pairwise alignments with dynamic programming Nathalie 3 (pp37-41)
25 Sep Sequence searches Nathalie 4
27-29 Sep PC lab B: Introduction to case/Sequence searches Bojan + +
2 Oct Molecular Phylogenetics Bojan 10 and ""11""
9 Oct Multiple sequence alignment Nathalie 5
16 Oct No lecture
23 Oct Protein structure basics and structure-function relationship Nathalie 12
18-20 Oct PC lab C: Multiple Sequence Alignments Bojan + +
30 Oct Protein Structure Visualization, Comparison and Classification Nathalie 13
6 Nov Protein secondary structure prediction Nathalie 14
13 Nov Protein tertiary structure prediction I Nathalie 15
15-17 Nov PC lab D: Structures Bojan + +
20 Nov Protein tertiary structure prediction II Nathalie 15
22-24 Nov PC lab E: Structure Prediction Bojan + +
27 Nov From Genomes to Genes Michael Dondrup ""9""
4 Dec Q&A Nathalie++
11 Dec, 9:00-13:00 Final written exam

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Teachers and Assistants

  • Nathalie Reuter, MBI/CBU (lecturer, course responsible)
  • Michael Dondrup, II/CBU (lecturer)
  • Bojan Kretnic, MBI/CBU (teaching assistant)