Lecture plan

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Tentative lecture plan H2017

Mondays 14:15-16:00 in the Large Auditorium (2144) in the HIB Data building's 2nd floor (2. etg.). Relevant chapters and pages in the book are given for each lecture. Note the useful glossary in Appendix Two.

Lecture plan H2017
Date Topic Teacher Book chapters
21 Aug First gathering - about the course (you have to be there!) Nathalie Preface 1
28 Aug Lect.1 Introduction: Introduction to bioinformatics, terminology, basics of protein structure Nathalie '1' and 12 (173-182)
4 Sep Lect.2 Biological Databases Nathalie 2
6-8 Sep PC lab A: Databases Bojan + +
11 Sep Lect.3 Pairwise sequence alignments (1) Nathalie 3 (pp31-40)
18 Sep Lect.4 Pairwise sequence alignments (2) Nathalie 3 (pp41-50)
25 Sep Lect.5 Database similarity searches Nathalie 4
27-29 Sep PC lab B: Introduction to case/Sequence searches Bojan + +
2 Oct Lect.6 Multiple sequence alignment Nathalie 5
9 Oct Lect.7 Molecular Phylogenetics Bojan 10 and 11
16 Oct No lecture
23 Oct Lect.8 Protein structure basics and structure-function relationship Nathalie 12
18-20 Oct PC lab C: Multiple Sequence Alignments Bojan + +
30 Oct Lect.9 Protein Structure Visualization, Comparison and Classification Nathalie 13
6 Nov Lect.10 Protein secondary structure prediction Nathalie 14
13 Nov Lect. 11 Protein tertiary structure prediction I Nathalie 15
15-17 Nov PC lab D: Structures Bojan + +
20 Nov Lect.12 Protein tertiary structure prediction II Nathalie 15
27 Nov Lect.13 From Genomes to Genes Michael Dondrup 9
4 Dec Q&A Nathalie++
12 Dec, 9:00-13:00 Final written exam

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Teachers and Assistants

  • Nathalie Reuter, MBI/CBU (lecturer, course responsible)
  • Michael Dondrup, II/CBU (lecturer)
  • Bojan Kretnic, MBI/CBU (teaching assistant)